PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g027200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 287aa    MW: 30845.7 Da    PI: 8.8148
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g027200.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012115137123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ Cgk F++   L  H  +H
  Csa19g027200.1 115 YKCSVCGKAFPSYQALGGHKASH 137
                     9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.51E-9114137No hitNo description
PROSITE profilePS5015711.801115142IPR007087Zinc finger, C2H2
PfamPF139121.8E-13115138IPR007087Zinc finger, C2H2
SMARTSM003550.0043115137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-4115137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576671.51E-9171198No hitNo description
PROSITE profilePS501579.099176198IPR007087Zinc finger, C2H2
PfamPF139129.6E-14176200IPR007087Zinc finger, C2H2
SMARTSM003550.17176198IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280178198IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MALEAMNSPS SFTTRIETKE DLMNDAVFME PWLKRKRSKR QRSHSPSSSS SSPPRSRPKS  60
QNHQDLTEEE YLALCLLMLA KDQPSPSTTT QTRFHLSQPQ TQTPPPESSK TLSSYKCSVC  120
GKAFPSYQAL GGHKASHRIK PPTVTPNPDD PSSTAAPTVS AAAGEKHPIS ASGKIHECSI  180
CHKVFPTGQA LGGHKRCHYE GNLGGGGGGS KSVSHSGSVS STVSEERSNR GFIDLNLPAL  240
PELSLHHNPI SAADEEILSP LTGKKPLLLT DHDQVIKKEA DLSLRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13239LKRKRSKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487903.10.0PREDICTED: zinc finger protein AZF2
SwissprotQ9SSW21e-130AZF2_ARATH; Zinc finger protein AZF2
TrEMBLD7LA101e-126D7LA10_ARALL; Putative uncharacterized protein
STRINGAT3G19580.11e-127(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102721829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.21e-109zinc-finger protein 2